PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02541.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 389aa    MW: 42646.1 Da    PI: 4.9921
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02541.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.31.1e-30551961128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75 
                              lp+G++F+Ptde+++ e+L++k+          +   e     v ++v+i++++P++Lp  ++++  + +fF+++ ++y tg+rk+
  Rsa1.0_02541.1_g00005.1  55 LPKGVKFEPTDENII-EFLEAKCGVGAskphvlI---EefirpVTEDVGINYTHPENLP-GANKDGVSAFFFHTTVQAYGTGQRKR 135
                              799************.9*****876664555552...13444467889***********.445566789***************** PP

                      NAM  76 ra.......tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                              r+        +  +W++tgk+k+vl  +g + g+kk++v+yk   + +k+ekt+Wv+h+y+l
  Rsa1.0_02541.1_g00005.1 136 RKitptclnEEPVRWHKTGKTKHVLL-NGVQRGCKKIMVLYKSalNGSKPEKTNWVLHQYHL 196
                              *7556555444788************.99************6434667777*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-3442214IPR003441NAC domain
PROSITE profilePS5100528.54555214IPR003441NAC domain
PfamPF023657.8E-1356196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MASAWIVDGP GMASKVKNAS LSSPLQTRDS GACIQCPNCC FRIDNSNVLV PLPGLPKGVK  60
FEPTDENIIE FLEAKCGVGA SKPHVLIEEF IRPVTEDVGI NYTHPENLPG ANKDGVSAFF  120
FHTTVQAYGT GQRKRRKITP TCLNEEPVRW HKTGKTKHVL LNGVQRGCKK IMVLYKSALN  180
GSKPEKTNWV LHQYHLGTEG NERGEYVVSK ITYQKEKVKD EGESSSGVRG GPTTPMTNTP  240
TPPRPLDGGV PGDEKAFDDD KMFDPFYEGL DSIPEAALWS KKARREEDVA GVKVSEDNLT  300
CNESIEASSA WENQLLPNPS LGELDGFALS DLENADLGTP PDFLTVRSKL NHFVEEGSLN  360
LDADMDIIGG GWVLQLASQD SLMNWMGWL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0093251e-55AC009325.8 Arabidopsis thaliana chromosome III BAC F4P13 genomic sequence, complete sequence.
GenBankCP0026861e-55CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134601.10.0PREDICTED: NAC domain-containing protein 8
RefseqXP_013735630.10.0PREDICTED: NAC domain-containing protein 8-like
SwissprotQ6NQK22e-67NAC8_ARATH; NAC domain-containing protein 8
TrEMBLA0A0D3B9910.0A0A0D3B991_BRAOL; Uncharacterized protein
TrEMBLM4C9X10.0M4C9X1_BRARP; Uncharacterized protein
STRINGBra001000.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50452651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.10.0NAC domain containing protein 44